Well I have another problem and I shall post my load order and a bunch of pictures.
I was running to check a few things in the train station and behind the National Archives I noticed this:

It seems that a piece of rubble may be missing a texture or something like that.
Then I go to show the problem I was having as it persists:



This is me walking through the cells of the train station after the opening the blast doors (I used tcl and tgm to quickly run here so do keep that in mind for everything except the cell problems) and notice I can't look into other cells that I have and can walk through.
Then we have this, which I couldn't duplicate after reloading the save:

Now we have Doctor Li joining me on an adventure to try and go to Nevada even though she just told me to shut up so she could get back to work and when then proceed to leave me and go into the metro (she appeared in each new world space I went to). This stopped when I reloaded the save though.
[collapsed title=Load Order]
FalloutNV.esm
DeadMoney.esm
HonestHearts.esm
OldWorldBlues.esm
LonesomeRoad.esm
GunRunnersArsenal.esm
Fallout3.esm
Anchorage.esm
ThePitt.esm
BrokenSteel.esm
PointLookout.esm
Zeta.esm
TaleOfTwoWastelands.esm
ClassicPack.esm
MercenaryPack.esm
TribalPack.esm
CaravanPack.esm
AWorldOfPain(Preview).esm
Interior Lighting Overhaul - Core.esm
Interior Lighting Overhaul - L38PS.esm
Project Nevada - Core.esm
Project Nevada - Equipment.esm
Project Nevada - Extra Options.esm
Project Nevada - Rebalance.esp
Project Nevada - Cyberware.esp
TTWInteriors_Core.esm
TTWInteriorsProject_Combo.esm
TTWFixes.esm
streetlights.esm
Niner.esm
Vault 101 Revisited.esm
TTW_NoKarmaDCFollowers.esp
Integration - Couriers Stash.esp
The Mod Configuration Menu.esp
Alsatian NCR Guard Dogs.esp
BetterArmedBrightFollowers.esp
Better Burned Man.esp
CorpseEquip.esp
GRARG.esp
populatedcasino-medium.esp
TorresInventoryExpansion.esp
sjs_ultraluxereplacer.esp
Cut Content.esp
Expanded Traits.esp
More Perks.esp
Better Casinos.esp
Casino UnBanner.esp
GRA - The Right to Bear Arms.esp
MoreContainers.esp
NukaVend25.esp
Rustyhwys.esp
SignatureArmor.esp
SignatureWeapons.esp
DeadMoneyMoreCraftedKnifeVariants.esp
MiscItemWeapons.esp
Murdelizer.esp
PlasmaRifleAwesomefied.esp
EMR-StealthSuitMkII.esp
FlashlightNVSE.esp
HitmanSuitNV-B.esp
PlasmaShields.esp
AWOP DLC + GRA Conflict Error Fixes.esp
desmond companion.esp
GARU.esp
dD - Enhanced Blood Main NV.esp
Delay DLC - TTW.esp
no-faction-warning.esp
Vault_34_better_reactor.esp
XIII + J3X's Flesh Burnificating Plasma.esp
WMXUE.esp
SimpleStreetLights.esp
Fellout.esp
Fellout-OWB.esp
friendofnightforfellout.esp
Interior Lighting Overhaul - Ultimate Edition.esp
ILO - A World of Pain.esp
Cut Content Fixes.esp
AWOP - Balance and Cleanup.esp
Benny's Lucky Lighter.esp
Bennys Lucky Suit.esp
Machienzo-RadioNewVegasBugFix.esp
Busworld.esp
TTW_Companions_Essential.esp
ttw_femaleenclavesoldiers.esp
TTW Vehicle Scavenge.esp
uylssesbarksfix.esp
Companions Relax.esp
D.C. Confidential.esp
DLC WITM - Complete.esp
ED-E Heavy Weapons.esp
ED-E Flying Fixed.esp
ExtendedDialogueVulpes.esp
PlastekTeslaRiflev1.esp
Follower Amata ULTIMATE.esp
NewMall.esp
Halo.esp
HW-Powerfist-7UPD.esp
ProductionPlasmaRifle.esp
NV Veronica Hood n Robes Playable.esp
vault22FloralOverhaul.esp
Bzzt!.esp
TTW_BaileysCrossingMetro.esp
TTW - Fellout.esp
veronicacutenerd.esp
Rebuild Ed-E.esp
KH TTW Bugfixes.esp
TTW Perk Overhaul.esp
OWBFixes.esp
KatanaSheathRemover.esp
CouchFix.esp
Nova-Prostitute.esp
LFox Magic Fingers Perk Level 24.esp
Newoffice.esp
Cannibal.esp
AER14 Green disintegration.esp
Real Chinese Stealth Armor (Lucky 38 Basement).esp
VeronicaRechargerPistol.esp
WMXUE-CouriersStash.esp
wmx-ttw-unified.esp
ILO - Tale of Two Wastelands.esp
TTW - Realistic Interior Lighting.esp
Project Nevada - Rebalance Complete.esp
Project Nevada - Cyberware Additions.esp
Project Nevada - All DLC.esp
Project Nevada - TTW.esp
NukaChemistPlus.esp
ttw_introvideofix.esp
ttwweaponmods.esp
My Merged Patch.esp
Total active plugins: 129
Total plugins: 129
[/collapsed]